DEV Community: yaellevy

Create new project-github

yaellevy — Sun, 18 Jun 2023 19:59:22 +0000

This mission was the best practice on osdc course!
We applied everything we learned in this course!!!
First - I created new project on my GitHub
Second - I uploaded my project in "computational Biolagy" written with python
In this Project I Researched the Genom of Bacillus subtilis bacterium by math functions
Third - writing README file
Four - uploading necessary files to run the project such as requirements file
Five - Added the mentor
When my GitHub area for my project was building I recieved 2 PR from my partner who wrote the project with me - Eliyahou Levy
The first PR was to add [test_main]

(https://github.com/yaellevy/Computationalbiology/pull/1) file
The second PR was to add the workflow
The test_main file checked my genom file is valid -this was very necessary for the project so I merged it immediately
The workflow run successfully so I merged this PR also
Computational biology

Pytest & unit test in python

yaellevy — Tue, 13 Jun 2023 10:39:14 +0000

Session 11: Testing with PyTest
useful links:
Testing Demo
Testing with Pytest
what we learned:
testing with pytest
test methods
testing demo tools in Python
AUT-application under test
Regression test
doctest
unit test
pytest
pytest run doctest
test coverage
pytest setup
examples test
expected exception
change text
pytest missing exception
exception raised
exercise-test exceptions
multiple failures
selective running of test functions
stop on the first failure
examples:

_**import unittest
Now to make our class declaration:
class TestingClass(unittest.TestCase):

Inside the class add our first function:
def test_first(self):
test_var = 9 + 1
self.assertEqual(11,test_var)**_
self.assertEqual is a method given by the previously inherited class (unittest.TestCase). This method tests if the 2 variables are equally of the same value.

Adding our test runner. This is what makes our unit test run:
unittest.main()
This is what the completed code should look like:

The above code demonstrates testing if 9 + 1 is equal to 11. If you know any basic math you should know that 9+1 = 10. Hence this test case would fail.

_Output:

As you should have already guessed. Failure!

The fix is simple. Modify the code to:
test_var = 9 + 2
Output:

Testing Outside Functions
For testing outside of functions, the previous example might not be realistic. Let’s replace the test_var values to now come from a function. We will add a functional declaration to the top of our file.
def add(a,b):
return a + b
This function adds 2 numbers together. Replace 9 + 2 with the function call add(9,2) and then run your code.

Assignment 5-PR to fix Projects

yaellevy — Mon, 05 Jun 2023 09:58:55 +0000

It was quite a challenging task to search for projects and send PR to it.
I searched in pydigger and found a list of sites that lead to 404 page.
I looked for the right link for each of the projects and sent them a PR to fix it.
for example:

_elkaudio _project the url was : elkaudio on pydigger the proper url is: https://github.com/elk-audio/elkpy

The PR

EliLillyCo/MQIT_DIA_ADFPRO The VSC was not found: https://github.com/EliLillyCo/MQIT_DIA_ADFPRO I have searched on GitHub by the Author's name and found Summary: A Python application for anomaly detection Home-page: https://github.com/EliLillyCo/MQIT_DIA_ADFPRO Author: Francesco Gabbanini, Manjunath Bagewadi, Henson Tauro I opened an issue to fix it

Our final project is about Smart Contract Vulnerabilities
Accordingly we are following this projects:

IRAILS
A mvc framework used FastApi Simple and elegant use of FastApi in MVC mode
Smart-Contract-Dataset
This dataset consists of over 40K real world Ethereum smart contracts.
Secureum
GNNSCVulDetector
This repo is a python implementation of smart contract vulnerability detection using graph neural networks
smart-contract-vulnerabilities

CI - workflows/actions

yaellevy — Tue, 23 May 2023 11:29:51 +0000

Introduction to CI
Github Actions
workflow example and implementation
Ubuntu, macOS and Windows examples
Triggering jobs
Github environment variables
Github actions repositories
Github matrix strategy
recap
conditions
Actions collection

I have added CI.yaml to capella project
.github/workflows/CI.yaml

git-scm on Windows, GitHub contribution workflow

yaellevy — Mon, 08 May 2023 12:27:53 +0000

How to add/edit files to GitHub from my Windows environment:
first - download notepad
second - download git-scm
//Do not forget to choose Notepad as the default editing program

I have added an organization as yaml file to
open-source-by-organizations site by the following instructions:

$ git clone https://github.com/OSDC-Code-Maven/open-source-by-organizations.git //
Cloning into 'open-source-by-organizations'
$ cd open-source-by-organizations/)
$ cat .git/config
$ git checkout -b organizations/add
Switched to a new branch 'organizations/add'
$ git status
On branch organizations/add
nothing to commit, working tree clean
$ cd data/organisations/
$ notepad jce.yaml
$ git remote -v
origin https://github.com/OSDC-Code-Maven/open-source-by-organizations.git
(fetch)
origin https://github.com/OSDC-Code-Maven/open-source-by-organizations.git
(push)
$ git push --set-upstream fork organizations/add
$ git add jce.yaml
$ git commit -m "add jce organization"
[organizations/add 0737ede] add jce organization
1 file changed, 5 insertions(+)
create mode 100644 data/organisations/jce.yaml
$ git rebase main
$ git push --force

its time for PR waiting for me in the site

Docker

yaellevy — Tue, 02 May 2023 20:56:49 +0000

In the lesson we learned about building new enviroement that has an image that serves the project we want to run.
That is Docker.
we can clone any project to our computer.
the advantages of using the Docker is that we can run it seperately from other services that runs on our computer.
In that way we are sort of safe running the project, beacause we use permission to control on what the new project can tuch.
It is very easy to delete the new project without harming any other service that runs on our computer.