Say, we have two points on the equator.
Point 1: latitude 0, longitude 0.
Point 2: latitude 0, longitude 1.

Distance between them, measured as if they were flat coordinates: 1. (Units: degrees.)

Distance between them, measured as if they're on the planet Earth: 111.19 km.

111 (km) != 1 (degree).

Moreover, measuring distance in degrees doesn't make sense because one degree longitude is not equal to one degree latitude; and one degree longitude means different number of kilometres depending on latitude. The closer to the pole you go, the less kilometres "fit" in 1 degree longitude. (Note to self: I need to write an article about that and add pictures. It would be easier to explain with pictures.)

I suspect that you might be talking about specific projections, such as UTM, where for certain subset of coordinates distances between them, measured using the Pythagorean theorem, will roughly match the real on-the-planet-surface distance.

But if you're using such projection, your points' coordinates are also specified in that projection, and not in latitudes and longitudes.

To compare the distances, you'd have to first convert your point latitude and longitude to the coordinate system coordinates and then perform the calculation according to the Pythagorean formula. That's possible, but it complicates tests too much.

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No, this is not the case. Here's a simple proof.

Say, we have two points on the equator.

Point 1: latitude 0, longitude 0.

Point 2: latitude 0, longitude 1.

Distance between them, measured as if they were flat coordinates: 1. (Units: degrees.)

Distance between them, measured as if they're on the planet Earth: 111.19 km.

111 (km) != 1 (degree).

Moreover, measuring distance in degrees doesn't make sense because one degree longitude is not equal to one degree latitude; and one degree longitude means different number of kilometres depending on latitude. The closer to the pole you go, the less kilometres "fit" in 1 degree longitude. (Note to self: I need to write an article about that and add pictures. It would be easier to explain with pictures.)

I suspect that you might be talking about specific projections, such as UTM, where for certain subset of coordinates distances between them, measured using the Pythagorean theorem, will roughly match the real on-the-planet-surface distance.

But if you're using such projection, your points' coordinates are also specified in that projection, and not in latitudes and longitudes.

To compare the distances, you'd have to first convert your point latitude and longitude to the coordinate system coordinates and then perform the calculation according to the Pythagorean formula. That's possible, but it complicates tests too much.