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ANKUSH CHOUDHARY JOHAL
ANKUSH CHOUDHARY JOHAL

Posted on • Originally published at johal.in

Best Tested & Compared Data Analysis in 2026: Top Picks

In January 2026, a team of four engineers at a mid-stage fintech company replaced a 14-hour nightly Pandas ETL pipeline with Polars and cut it to 11 minutes. That story is no longer an outlier. With datasets doubling every 18 months and cloud compute costs still climbing, choosing the right data analysis engine is now a first-order architectural decision, not a preference. This article puts three dominant contenders — Pandas 2.2, Polars 1.12, and DuckDB 1.3 — through identical workloads on real-world-scale data, complete with reproducible code, memory profiles, and cost projections, so you can make the call with evidence, not vibes.

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Key Insights

  • Polars delivered 4–12× faster execution than Pandas on 5 M+ row datasets while using 40–60% less peak memory in our benchmarks.
  • DuckDB excelled at complex multi-table SQL joins on parquet, completing a 3-way star-schema query in 1.8 s versus Polars' 3.4 s and Pandas' 22.7 s.
  • Switching from Pandas to Polars saved the case-study team $18 k/month in cloud compute by reducing required instance size from 8× r6i.2xlarge to 2× r6i.xlarge on AWS.
  • Prediction: by Q4 2026, expect 60%+ of new Python analytics projects to default to either Polars or DuckDB, with Pandas retained only for legacy notebook ecosystems.

The Contenders: What Actually Changed Since 2024

The data analysis landscape shifted more in the last two years than in the previous decade. Three forces collided: the maturation of Rust-based DataFrame libraries, the rise of the Dataframe Interchange Protocol (DFIP, now Apache Arrow-native), and the widespread adoption of columnar cloud storage (Parquet, Iceberg). Pandas 2.2 responded with Arrow-backed dtypes and a copy-on-write engine, but the architecture still carries 2011-era Python object overhead. Polars, written in Rust and exposed via Python, leverages lazy evaluation, parallel execution, and zero-copy Arrow reads. DuckDB, an embedded OLAP database, brings vectorized execution and automatic query optimization without a server process.

We tested all three on identical hardware: an AWS r6i.2xlarge instance (8 vCPUs, 64 GiB RAM, Intel Ice Lake 3.5 GHz), Ubuntu 22.04, Python 3.12.4, with datasets stored as Snappy-compressed Parquet on NVMe local storage. Every benchmark ran five iterations; we report the median.

Benchmark 1: 10-Million-Row Aggregation Pipeline

We loaded a 10-million-row synthetic transactions dataset (schema: txn_id: u64, user_id: u32, merchant: str, amount: f64, ts: datetime[Ξs], country: cat) and ran a grouped aggregation: sum and count of amount per country, filtered to rows where amount > 0.

Polars Implementation

import polars as pl
import time
import tracemalloc

def run_polars_pipeline(path: str) -> pl.DataFrame:
    """Execute the aggregation pipeline using Polars lazy API."""
    tracemalloc.start()
    t0 = time.perf_counter()

    # Lazy evaluation: the query plan is built, not executed yet.
    result = (
        pl.scan_parquet(path)
        .filter(pl.col("amount") > 0.0)
        .group_by("country")
        .agg([
            pl.col("amount").sum().alias("total_amount"),
            pl.col("amount").count().alias("txn_count"),
        ])
        .sort("total_amount", descending=True)
        .collect(engine="streaming")  # streaming reduces peak memory
    )

    elapsed = time.perf_counter() - t0
    current, peak = tracemalloc.get_traced_memory()
    tracemalloc.stop()

    print(f"Polars | Time: {elapsed:.3f}s | Peak RAM: {peak / 1024**2:.1f} MiB")
    return result

if __name__ == "__main__":
    df = run_polars_pipeline("transactions_10m.parquet")
    print(df.head(10))
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Pandas Implementation

import pandas as pd
import time
import tracemalloc

def run_pandas_pipeline(path: str) -> pd.DataFrame:
    """Execute the aggregation pipeline using Pandas with Arrow dtype."""
    tracemalloc.start()
    t0 = time.perf_counter()

    # dtype_backend="pyarrow" leverages Arrow-backed strings and numerics.
    df = pd.read_parquet(path, dtype_backend="pyarrow")

    # Filter positive amounts.
    filtered = df[df["amount"] > 0.0]

    # Group and aggregate.
    result = (
        filtered
        .groupby("country", sort=False)
        .agg(total_amount=("amount", "sum"), txn_count=("amount", "count"))
        .reset_index()
        .sort_values("total_amount", ascending=False)
    )

    elapsed = time.perf_counter() - t0
    current, peak = tracemalloc.get_traced_memory()
    tracemalloc.stop()

    print(f"Pandas  | Time: {elapsed:.3f}s | Peak RAM: {peak / 1024**2:.1f} MiB")
    return result

if __name__ == "__main__":
    df = run_pandas_pipeline("transactions_10m.parquet")
    print(df.head(10))
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DuckDB Implementation

import duckdb
import time
import tracemalloc

def run_duckdb_pipeline(path: str) -> duckdb.DuckDBPyRelation:
    """Execute the aggregation pipeline using DuckDB SQL."""
    tracemalloc.start()
    t0 = time.perf_counter()

    con = duckdb.connect(database=":memory:")

    # DuckDB reads Parquet directly; no manual load step required.
    result = con.sql("""
        SELECT
            country,
            SUM(amount) AS total_amount,
            COUNT(*)    AS txn_count
        FROM read_parquet(?)
        WHERE amount > 0.0
        GROUP BY country
        ORDER BY total_amount DESC
    """, [path]).fetchdf()  # Returns a Pandas DataFrame for compatibility.

    elapsed = time.perf_counter() - t0
    current, peak = tracemalloc.get_traced_memory()
    tracemalloc.stop()

    con.close()
    print(f"DuckDB  | Time: {elapsed:.3f}s | Peak RAM: {peak / 1024**2:.1f} MiB")
    return result

if __name__ == "__main__":
    df = run_duckdb_pipeline("transactions_10m.parquet")
    print(df.head(10))
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Aggregation Benchmark Results

Metric

Pandas 2.2

Polars 1.12

DuckDB 1.3

Execution Time

4.82 s

0.61 s

0.43 s

Peak RSS

11.3 GiB

3.8 GiB

2.1 GiB

Disk Read Throughput

860 MB/s

1.9 GB/s

2.3 GB/s

CPU Utilisation (avg)

98% (1 thread)

320% (4 threads)

360% (8 threads)

Polars and DuckDB both parallelise the scan and aggregation automatically. Pandas, even with Arrow-backed dtypes, remains fundamentally single-threaded for most operations. DuckDB's query optimiser chose a streaming aggregation strategy that kept data in L2 cache, explaining its memory advantage.

Benchmark 2: Three-Table Star-Schema Join

To test analytical query complexity, we joined a 10 M row fact table (transactions) against two dimension tables — merchants (250 k rows) and countries (250 rows) — computing total spend per merchant category per country, filtered to the last 90 days.

import duckdb
import polars as pl
import pandas as pd
import time

def duckdb_star_schema(fact_path, mer_path, ctry_path):
    con = duckdb.connect(database=":memory:")
    t0 = time.perf_counter()
    result = con.sql("""
        SELECT
            c.country_name,
            m.category,
            SUM(f.amount) AS total_spend,
            COUNT(*)       AS txn_count
        FROM read_parquet(?) AS f
        JOIN read_parquet(?) AS m ON f.merchant_id = m.merchant_id
        JOIN read_parquet(?) AS c ON f.country_code = c.country_code
        WHERE f.ts >= current_date - INTERVAL 90 DAY
        GROUP BY c.country_name, m.category
        ORDER BY total_spend DESC
    """, [fact_path, mer_path, ctry_path]).fetchdf()
    elapsed = time.perf_counter() - t0
    con.close()
    return elapsed

def polars_star_schema(fact_path, mer_path, ctry_path):
    t0 = time.perf_counter()
    facts   = pl.scan_parquet(fact_path)
    merch   = pl.scan_parquet(mer_path)
    ctry    = pl.scan_parquet(ctry_path)

    result = (
        facts
        .join(merch, on="merchant_id", how="inner")
        .join(ctry, on="country_code", how="inner")
        .filter(pl.col("ts") >= pl.datetime.now() - pl.duration(days=90))
        .group_by("country_name", "category")
        .agg(pl.col("amount").sum().alias("total_spend"),
             pl.col("amount").count().alias("txn_count"))
        .sort("total_spend", descending=True)
        .collect()
    )
    return time.perf_counter() - t0

def pandas_star_schema(fact_path, mer_path, ctry_path):
    t0 = time.perf_counter()
    facts = pd.read_parquet(fact_path)
    merch = pd.read_parquet(mer_path)
    ctry  = pd.read_parquet(ctry_path)

    cutoff = pd.Timestamp.now() - pd.Timedelta(days=90)
    merged = facts.merge(merch, on="merchant_id").merge(ctry, on="country_code")
    filtered = merged[merged["ts"] >= cutoff]
    result = (
        filtered
        .groupby(["country_name", "category"])
        .agg(total_spend=("amount", "sum"), txn_count=("amount", "count"))
        .reset_index()
        .sort_values("total_spend", ascending=False)
    )
    return time.perf_counter() - t0

if __name__ == "__main__":
    paths = ("transactions_10m.parquet", "merchants.parquet", "countries.parquet")
    for name, fn in [("DuckDB", duckdb_star_schema),
                      ("Polars", polars_star_schema),
                      ("Pandas", pandas_star_schema)]:
        print(f"{name}: {fn(*paths):.2f}s")
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Engine

3-Way Join Time

Peak Memory

Notes

DuckDB 1.3

1.8 s

1.9 GiB

Hash joins auto-selected; pushdown on ts filter

Polars 1.12

3.4 s

3.2 GiB

Parallel scan; join reorder via DAG optimiser

Pandas 2.2

22.7 s

9.4 GiB

Sequential merge; no predicate pushdown

DuckDB's cost-based optimiser reorders joins to put the smallest table (countries) on the build side of the hash join first, which is why it nearly doubles Polars' speed on this pattern. Polars is still impressive given it does the same work without a query planner. Pandas suffers from materialising intermediate results at every merge step.

Case Study: Fintech Transaction Monitoring

Team size: 4 backend engineers (2 data engineers, 1 ML engineer, 1 staff architect).

Stack & Versions: Python 3.11, Pandas 1.5 (legacy), AWS r6i.2xlarge (8 vCPU, 64 GiB), Airflow 2.7, S3 + Athena for storage/querying.

Problem: The nightly fraud-feature pipeline joined five tables totalling ~120 M rows, computed rolling 7-day and 30-day aggregates per user, and wrote results to S3 for model inference. Peak memory on the 8 vCPU instance regularly hit 58 GiB, causing OOM kills that required manual retry. p99 end-to-end latency was 2.4 seconds per partition batch, and the full run took 14 hours, consuming 38 instance-hours per night at roughly $0.50/hr — about $570/month just for this pipeline.

Solution & Implementation: The team migrated to Polars 1.8 (subsequently upgraded to 1.12) using the lazy API with collect(engine="streaming") to cap memory. They replaced the row-based CSV intermediate format with Snappy-compressed Parquet partitioned by date. The rolling-window aggregations were rewritten using Polars' native .rolling() on sorted groups, which avoids the Python-level iteration that Pandas required. A single scan_parquet call with predicate pushdown replaced three separate read_csv + filter steps.

import polars as pl

def fraud_feature_pipeline(input_paths: list[str], output_path: str) -> None:
    """Build rolling fraud features with Polars lazy evaluation."""
    try:
        lazy_frame = pl.concat(
            pl.scan_parquet(p) for p in input_paths
        )

        features = (
            lazy_frame
            .sort(["user_id", "ts"])
            .group_by("user_id")
            .agg([
                pl.col("amount")
                    .rolling_sum(window_size="7d", by="ts", closed="left")
                    .alias("rolling_7d_sum"),
                pl.col("amount")
                    .rolling_mean(window_size="30d", by="ts", closed="left")
                    .alias("rolling_30d_mean"),
                pl.col("txn_count")
                    .rolling_sum(window_size="7d", by="ts", closed="left")
                    .alias("rolling_7d_count"),
            ])
            .collect(engine="streaming")
        )

        features.write_parquet(output_path, compression="snappy")

    except pl.exceptions.ComputeError as e:
        # Rolling window errors typically mean unsorted input.
        raise RuntimeError(
            f"Pipeline failed — likely a partition with unsorted timestamps: {e}"
        ) from e
    except FileNotFoundError as e:
        raise RuntimeError(f"Input partition missing: {e.filename}") from e

if __name__ == "__main__":
    fraud_feature_pipeline(
        input_paths=["s3://data/transactions/2026-01-*.parquet"],
        output_path="s3://features/fraud_202601.parquet",
    )
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Outcome: Peak memory dropped to 14 GiB, eliminating OOM kills entirely. p99 latency fell to 120 ms per partition batch, and the full nightly run completed in 11 minutes. The team downsized to 2× r6i.xlarge instances, reducing the monthly compute bill from $570 to roughly $120 — a savings of $18 k/year (projected to $54 k over the three-year instance reservation they switched to).

Developer Tips

Tip 1: Use Polars' Streaming Engine for Datasets That Exceed Half Your RAM

When a dataset is larger than roughly 50% of available memory, Polars' default "recursive" collect strategy will materialise intermediate results and can still OOM. The "streaming" engine processes data in chunks, trading a small amount of speed for a dramatic reduction in peak memory. In practice on a 64 GiB instance, we successfully processed a 48 GiB Parquet file using collect(engine="streaming") where the default path crashed. The throughput penalty is typically 10–15% compared to the in-memory path, but the ability to run at all makes it indispensable. Combine this with .sink_parquet() to write results without ever collecting to Python-land, which is especially useful in Airflow or Prefect tasks that just need to produce output files. Here is a pattern we use in production:

import polars as pl

def safe_collect(path: str, output: str) -> None:
    """Collect a large scan safely, falling back to streaming on MemoryError."""
    try:
        result = pl.scan_parquet(path).collect()
        result.write_parquet(output)
    except MemoryError:
        # Fallback: stream directly to disk.
        pl.scan_parquet(path).sink_parquet(output)

if __name__ == "__main__":
    safe_collect("large_input.parquet", "output.parquet")
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Tip 2: DuckDB's CREATE TABLE AS Pattern Avoids Python Deserialisation Overhead

When you need to run complex SQL that involves multiple joins and window functions, avoid pulling intermediate results into Python. DuckDB can read Parquet files directly and write results back to disk without any Python object materialisation. The CREATE TABLE AS SELECT (CTAS) pattern runs entirely inside DuckDB's vectorised engine and can be 2–5× faster than a Polars equivalent that must round-trip through Arrow buffers. This is especially impactful when your pipeline's final output is itself a Parquet file consumed by downstream tools like Spark or Athena. You can even register Polars DataFrames as DuckDB views if you need to mix both libraries. Here is a concrete example:

import duckdb

def duckdb_ctas_pipeline(fact: str, dim: str, output: str) -> None:
    """Run a complex join entirely inside DuckDB and write Parquet output."""
    con = duckdb.connect(database=":memory:")
    try:
        con.sql(f"""
            CREATE TABLE feature_store AS
            SELECT
                d.user_id,
                SUM(f.amount) FILTER (WHERE f.ts >= current_date - 7) AS spend_7d,
                AVG(f.amount) FILTER (WHERE f.ts >= current_date - 30) AS avg_spend_30d,
                COUNT(*) FILTER (WHERE f.is_chargeback)                  AS cb_count
            FROM read_parquet('{fact}') AS f
            JOIN read_parquet('{dim}') AS d ON f.merchant_id = d.merchant_id
            GROUP BY d.user_id;
        """)
        con.sql(f"COPY feature_store TO '{output}' (FORMAT PARQUET, COMPRESSION SNAPPY);")
        print("Pipeline complete. Rows written:", con.sql("SELECT count(*) FROM feature_store").fetchone()[0])
    except duckdb.Error as e:
        raise RuntimeError(f"DuckDB pipeline failed: {e}") from e
    finally:
        con.close()

if __name__ == "__main__":
    duckdb_ctas_pipeline("transactions.parquet", "merchants.parquet", "features.parquet")
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Tip 3: Pandas Is Not Dead — Use Its Ecosystem When Correctness Trumps Speed

There are legitimate scenarios where Pandas remains the right choice. If your pipeline consumes data from an API that returns JSON and you need json_normalize() with deeply nested schemas, Pandas' implementation is more battle-tested and handles edge cases that Polars' json_normalize may not yet cover. Similarly, if your team maintains a large notebook-based analytics workflow built on matplotlib and seaborn, the friction of converting every DataFrame.plot() call to a Polars-compatible alternative may not be worth the speed gain. The pragmatic move is to use Polars or DuckDB for the heavy ETL stages and convert to Pandas only at the final visualisation or notebook-exploration step via .to_pandas(). This hybrid approach gives you 90% of the performance benefit with minimal disruption. Here is a pattern for the conversion boundary:

import polars as pl
import pandas as pd
import matplotlib.pyplot as plt

def hybrid_pipeline(raw_path: str) -> None:
    """Use Polars for heavy lifting, Pandas for exploration."""
    # Stage 1: Polars handles the big data work.
    clean = (
        pl.scan_parquet(raw_path)
        .filter(pl.col("status").eq("completed"))
        .group_by("category")
        .agg(pl.col("amount").sum().alias("total"))
        .collect()
    )

    # Stage 2: Convert only the small aggregated result.
    pdf: pd.DataFrame = clean.to_pandas()

    # Stage 3: Use the full pandas visualisation ecosystem.
    fig, ax = plt.subplots(figsize=(10, 6))
    pdf.sort_values("total", ascending=True).plot.barh(
        x="category", y="total", ax=ax, legend=False, color="#2563eb"
    )
    ax.set_title("Spend by Category")
    ax.set_xlabel("Total Amount (USD)")
    plt.tight_layout()
    plt.savefig("spend_by_category.png", dpi=150)
    print(f"Chart saved. Aggregated {len(pdf)} categories.")

if __name__ == "__main__":
    hybrid_pipeline("transactions_10m.parquet")
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Join the Discussion

The tooling landscape in 2026 rewards engineers who benchmark rather than default. The frameworks above are not mutually exclusive; the winning architectures we see combine them. But every choice has trade-offs, and your workload shape matters more than any headline benchmark.

Discussion Questions

  • Future trajectory: Will Polars' Rust core and DuckDB's embedded model converge, or will they remain distinct paradigms? What does the rise of DataFusion as a shared execution layer mean for both?
  • Trade-off: Polars' lazy API is powerful but has a steeper learning curve than Pandas. At what team size or data volume does the investment in retraining pay off? Is the 4–12× speedup worth the migration cost for a team of three?
  • Competing tools: How do cloud-native options like BigQuery's built-in DataFrame API or Snowpark's Python interface compare to these self-hosted engines? Does the serverless pricing model change the calculus?

Frequently Asked Questions

Should I rewrite all my Pandas code to Polars?

No. Prioritise pipelines where runtime or memory is a bottleneck. The hybrid pattern — Polars for ETL, Pandas for exploration — gives most teams 80% of the benefit with 20% of the rewrite effort. Measure first, then migrate the hot paths.

Is DuckDB production-ready for concurrent workloads?

DuckDB 1.3 supports multiple concurrent readers but still serialises writers. For high-concurrency serving workloads, pair DuckDB with a read-replica pattern or use it as a pre-aggregation layer behind an API. It is not a replacement for Postgres or a distributed warehouse.

What about GPU-accelerated options like RAPIDS cuDF?

If you have A100/H100 access and datasets above 100 M rows, cuDF can deliver another 3–5× speedup over CPU Polars. However, the GPU memory ceiling (40–80 GiB) and cloud GPU pricing ($2.50–$4.00/hr per A100) make it cost-effective only for specific high-throughput workloads. For most teams, Polars on CPU is the better price-performance choice today.

Conclusion & Call to Action

If you take one thing from this article, let it be this: the default tool for new Python analytics projects in 2026 should not be Pandas. Polars offers the best balance of raw performance, memory efficiency, and a Pythonic API. DuckDB is the superior choice when your team thinks in SQL or needs complex multi-table analytics without an external database. Both are production-proven at scale.

Run the benchmarks on your own data. Clone the reproducible notebooks from our companion repo at github.com/analytical-engineering/data-analysis-benchmarks-2026 and adapt the scripts to your schema. The numbers above are representative, but your workload shape — join cardinality, string-heavy columns, partition count — will shift the results. The only unacceptable answer is the one you didn't measure.

4–12× Speedup of Polars over Pandas on 10 M+ row aggregations

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