To add your JavaScript code to the Google Apps Script project create a HTML file as is instructed in the best practices doc from Google. Example taken from the referred page:
Code.gs
function doGet(request) {
return HtmlService.createTemplateFromFile('Page')
.evaluate();
}
function include(filename) {
return HtmlService.createHtmlOutputFromFile(filename)
.getContent();
}
Page.html
<!DOCTYPE html>
<html>
…
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