MiniAn

MiniAn is an analysis pipeline and visualization tool inspired by both CaImAn and MIN1PIPE package specifically for Miniscope data.

Quick Start Guide

1. Create a new conda env: conda create -y --name minian
2. Activate the environment: conda activate minian
3. Install MiniAn: conda install -y -c conda-forge minian
4. Install the pipeline notebooks: minian-install --notebooks
5. Optional install the demo movies: minian-install --demo
6. Fire up jupyter: jupyter notebook and open the notebook "pipeline.ipynb"

Documentation

MiniAn documentation is hosted on ReadtheDocs at:

https://minian.readthedocs.io/

Contributing to MiniAn

We would love feedback and contribution from the community!
See the contribution page for more detail!

License

This project is licensed under GNU GPLv3.