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Sofia Bennett
Sofia Bennett

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When code suggestions suggest the past: deprecated Pandas APIs and silent drift

We recently had a sequence of production bugs that traced back to an AI code assistant recommending deprecated Pandas APIs. At glance the snippets it produced looked idiomatic: df.as_matrix(), df.ix[... ] and in-place mutations with inplace=True. They ran in developer environments and unit tests, so the suggestions felt low-risk, which is exactly why they became dangerous.

The model’s training signal contained a lot of older public code, so it favored patterns that have since been phased out. Our team leaned on the assistant for quick refactors and data-transformation snippets, and we treated its output as a near-drop-in replacement instead of a draft that needed API verification. We later tracked this workflow back to the root cause and documented the pattern on crompt.ai for team awareness.

How it surfaced during development

The issue first appeared when a minor data pipeline change produced subtly different results after a dependency upgrade. Tests still passed locally because our CI used an older pin. The production discrepancy was small — a column dtype change and a few NaNs in borderline cases — but it cascaded into downstream joins and an offline analytics mismatch. The code snippets from the assistant had used .ix for mixed indexing and as_matrix() to convert frames, both of which behave differently or are removed in modern Pandas.

We used a multi-turn debugging flow through a chat interface to iterate on hypotheses, and the assistant helped surface where the API usage deviated. That was useful, but also misleading — the model focused on syntactic fixes rather than advising to check deprecation notes or the installed pandas version, so a long conversation still missed the real root cause until we ran the code against an upgraded environment.

Why the deprecation was easy to miss

Two things make deprecated API suggestions especially subtle. First, deprecation warnings are often filtered in test suites, so local runs don’t surface risk. Second, many deprecated methods silently change semantics: as_matrix() returns an ndarray with dtype coercions, and .ix mixes label and positional selection. These differences can be data-dependent and only show up with certain inputs or after a dependency bump.

Small model behaviors compound this: the assistant reliably writes concise code, so reviewers assume it’s idiomatic. It also suggests default parameters (like inplace=True) that optimize for brevity, not safety. Those defaults change mutation behavior across versions, which turned a one-line suggestion into a silent data corruption path when upstream code relied on previous copy semantics.

Mitigation and verification patterns

We adopted a few lightweight guardrails. Pin dependency versions in CI and run an upgrade matrix in a staging job. Treat AI output as a draft — add a checklist item to verify the API’s current stability and search the library changelog. We also configured warnings to fail CI so deprecation notices become visible earlier.

When using assistants for refactors, include a verification step that consults authoritative sources; a focused deep research query or a quick search of the library docs can catch deprecated methods. Finally, add targeted unit tests for edge cases (indexing and dtype-sensitive transforms) so future suggestions that change semantics are caught by tests rather than by downstream users.

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