Farhan Rehman Sherief

Python, Scanpy, AnnData, pandas, NumPy, matplotlib, seaborn. scRNA-seq QC, UMAP, differential expression, Leiden clustering. Jupyter, Git.

Trajectory inference & RNA velocity for cell state transitions. Exploring multi-modal single-cell integration with Muon and scVI-tools.

scRNA-seq analyses of human disease — recently: Alzheimer's brain tissue and the NSCLC tumour microenvironment. Expanding into trajectory analysis.

Chats on scRNA-seq workflows, Scanpy pipelines, or computational biology. Working on disease genomics or cancer immunology? Say hello!