We often use Azure Web App and Key Vault together to protect keys/secrets/certificates.
To read certificates from Key Vault by using system assigned managed identity of App Service, there are several things to do.
Enable Managed Identity
From WebApp, enable managed identity.
Grant Access in KV
From Key Vault access policy, assign certificate get permission (or any other additional required permissions) for the managed id.
WEBSITE_LOAD_USER_PROFILE for Configuration
From WebApp configurations menu, add WEBSITE_LOAD_USER_PROFILE application setting and set value to 1.
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